1.75-billion-year-old fossils help explain how photosynthesis evolved


Microscope image of modern cyanobacteria called oscillatoria

Researchers have identified photosynthetic structures inside fossils of cyanobacteria that are 1.75 billion years old. The discovery is the oldest evidence of these structures to date, providing clues into how photosynthesis evolved.

Emmanuelle Javaux at the University of Liège in Belgium and her colleagues analysed fossils collected from rocks at three sites. The oldest site was the roughly 1.75-billion-year-old McDermott Formation in Australia, and the other two were the billion-year-old Grassy Bay Formation in Canada and the Bllc6 formation in the Democratic Republic of the Congo.

Read more We might officially enter the Anthropocene epoch in 2024

From these rocks, the researchers extracted fossilised cyanobacteria, which produce energy through photosynthesis. “They’re very tiny, less than a millimetre, so you cannot see them with your eyes,” says Javaux. She and her colleagues placed the fossils in resin and sliced them into 60 to 70-nanometre-thick sections using a diamond-edged knife, and then analysed the internal structures with an electron microscope.

They found that the cyanobacteria from Australia and Canada contained thylakoids, or membrane-bound sacs where photosynthesis occurs. “These are the oldest fossilised thylakoids that we know of today,” says Javaux. Previously, the oldest thylakoid fossils were about 550 million years old. “So, we pushed back the fossil record by 1.2 billion years,” she says.

This is important because not all cyanobacteria have thylakoids, and it is unclear when these structures, which made photosynthesis more efficient, first evolved, says Kevin Boyce at Stanford University in California. We can now date this diversification to at least 1.75 billion years ago, he says. The oldest fossils of cyanobacteria are about 2 billion years old, though other evidence, like geochemical signatures, indicate photosynthesis has been around for even longer than that.

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It is widely believed that cyanobacteria drove the accumulation of oxygen in Earth’s atmosphere 2.4 billion years ago. “One idea is that, perhaps, they invented thylakoids at this time, and this increased the quantity of oxygen on Earth,” says Javaux. “Now that we’ve found very old thylakoids and that they can be preserved in very old rocks, we think that we could go further back in time and try to test this hypothesis,” she says.

Photosynthesis by marine algae produces sound, contributing to the daytime soundscape on coral reefs


Abstract

We have observed that marine macroalgae produce sound during photosynthesis. The resultant soundscapes correlate with benthic macroalgal cover across shallow Hawaiian coral reefs during the day, despite the presence of other biological noise. Likely ubiquitous but previously overlooked, this source of ambient biological noise in the coastal ocean is driven by local supersaturation of oxygen near the surface of macroalgal filaments, and the resultant formation and release of oxygen-containing bubbles into the water column. During release, relaxation of the bubble to a spherical shape creates a monopole sound source that ‘rings’ at the Minnaert frequency. Many such bubbles create a large, distributed sound source over the sea floor. Reef soundscapes contain vast quantities of biological information, making passive acoustic ecosystem evaluation a tantalizing prospect if the sources are known. Our observations introduce the possibility of a general, volumetrically integrative, noninvasive, rapid and remote technique for evaluating algal abundance and rates of primary productivity in littoral aquatic communities. Increased algal cover is one of the strongest indicators for coral reef ecosystem stress. Visually determining variations in algal abundance is a time-consuming and expensive process. This technique could therefore provide a valuable tool for ecosystem management but also for industrial monitoring of primary production, such as in algae-based biofuel synthesis.

Introduction

Coral reef degradation and algal smothering are caused by human impacts such as overfishing, pollution through nutrient runoff and climate change effects. Algal dominance diminishes the value of reefs [1], is likely permanent [2, 3], and serves as a clear indicator of ecosystem degradation [4]. Timely monitoring of reef state is crucial to quantifying impacts and mitigating ecosystem shifts [5], but present-day assessment methods are resource intensive and infrequent [6]. Because coral reefs are highly soniferous ecosystems where most sound comes from biological processes, ecologists have sought to apply the integrative acoustic monitoring approaches used successfully in terrestrial soundscape ecology [7, 8]. These techniques can yield spatially integrative and long-term continuous observations that can be collected autonomously with inexpensive recorders, but the sources of many reef sounds are challenging to identify [9]. Previously we established positive correlations (Pearsons ρ) between benthic macroalgal cover and aspects of coral reef soundscapes (acoustic pressure spectral density levels in the 2 to 20 kHz band) at 17 sites over a 2570 km transect from Kure Atoll to the Island of Hawaii [10]. These correlations were only observed during the day when overall sound levels were typically lower (Table 1), and correlations of this nature did not exist between sound and any other non-acoustic environmental metric. To further deconvolute the soundscape sources, we performed tank-based passive acoustic experiments with the invasive Hawaiian algae Salicornia gracilaria. Ambient sound was recorded in combination with dissolved oxygen and time-lapse photography of algae under daylight and night conditions to investigate the mechanism behind the observed associations of sound with algal presence.

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Table 1. Correlation between benthic algal cover and coral reef soundscapes.

Pearson’s correlation coefficients between the percentage of benthic macroalgal cover at 17 reef sites throughout the Hawaiian Islands and ambient acoustic pressure spectral density in three bands between 2 and 20 kHz, obtained simultaneously at the same locations. Intensity-filtered spectra were averaged over one hour beginning at the indicated times.

https://doi.org/10.1371/journal.pone.0201766.t001

Short-time Fourier analysis on intensity filtered soundscape recordings [10] provide a more spectrally detailed view of individual transient soundscape components (i.e., most reef-based biological sound). Typical Fourier analysis approaches in underwater acoustics integrate over time periods that are much longer than each individual biological sound. While longer integration results in increased frequency resolution, ideal for detecting tonal and/or narrow-band sources, the approach can also spectrally smear multiple transient sounds together and/or reduce peak level estimates through giving equal weighting to quiet periods between transient arrivals. If a persistent environmental noise is present, it can mask some transient biological sounds sampled through this approach. Our approach involved selecting each transient using an intensity filter, ensuring the transform length encompassed only the transient, and then assessing the spectral qualities of each transient individually. As a consequence, reef spectra shown here cannot be directly compared to spectra obtained without intensity filtering. Depending on ambient and preamplifier noise levels, lower-level sounds from individual biological sources may not be discernable at significant distances from the source. However, many of these events occurring over a distributed area create an extended sound source for which propagation models show decreased attenuation with distance [11].

Results

With the onset of photosynthesis during light periods, bubbles could readily be observed with the naked eye on the surface of macroalgae (Fig 1A and 1B). As the bubbles detached from the plant, they created a short ‘ping’ sound. Acoustic recordings of bubble release separated by quiet periods consequently appear as an irregular pulse-train-like time series (Fig 1C). The sound created by perturbation of the bubble during release is naturally transient and decays exponentially (Fig 1D). Oversampled recordings (100 kS·s-1) permit more detailed spectral analysis of each sound (Fig 1E) and fundamental frequency estimates for each bubble can be made from the resultant data (Fig 1F). Tank resonance modes [12] were restricted through the presence of algae and the drafted, acoustically absorptive nature of the tank walls and did not appear to substantially influence the recorded spectra (Fig 1G).

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Fig 1. Characterization of bubble sound from algae.

(A) Gracilaria salicornia actively creating gas bubbles during photosynthesis. White arrows indicate the locations of larger bubbles. The scale bar is 5 mm in length (B) A closer view of one gas bubble about to detach from the algae surface. The scale bar is 2 mm in length. (C) A 9 s time series of ambient sound from inside the aquarium. (D) A high-resolution view of a typical transient waveform as shown in (C). (E) Spectrogram showing the time-varying spectral content of the received waveform in (D). (F) Pressure spectral density (PSD) estimates showing mean, median and maximum pressure spectral densities of received level from the 2 ms period as shown in (D) and (E), indicating the spectral peak of the waveform as 13.07 kHz (vertical dashed line). (G) An averaged spectrum from transient sounds recorded over one hour overlaid with standing-wave resonant tank modes. Mode sums indicate the sum of mode numbers in the horizontal (length, width) and vertical (depth) directions.

https://doi.org/10.1371/journal.pone.0201766.g001

Experiments with S. gracilaria in controlled laboratory settings demonstrate that sounds produced by algal photosynthesis are similar in nature to components of the soundscape recorded in shallow water regions where S. gracilaria and other benthic macroalgae species are common. With the intermittent application of Photosynthetically Active Radiation (PAR, μ = 381, σ = 67 μmol·m-2s-1, roughly equivalent to the available level at water depths of 10 m on a cloudy day in the equatorial pacific) the link between photosynthesis, dissolved oxygen and acoustic emissions through bubble formation becomes apparent (Fig 2 and S1 Fig). Over the duration of PAR application both the number of bubbles (R2 = 0.76, S2A Fig) and their mean size (R2 = 0.47, S2B Fig) increased with dissolved oxygen levels. The process was reversed with the removal of light. These increases in the size and rate of bubble formation during the illuminated period lower the frequency distribution of sounds produced by the algae (Fig 2A) and cause an increase in the Sound Exposure Level (SEL, R2 = 0.82, Fig 2B and S2C Fig), a measure analogous to acoustic work. The onset of bubbling rate and size increase from the application of light was delayed due to the time required for photosynthesizing algae to build supersaturation conditions in the surrounding water, and for bubbles to reach a size large enough to create sufficient buoyancy force to detach from the algae. After removal of the light source there was a comparable delay in the reduction of bubble production and sound, due to bubbles remaining on the algae and saturation state remaining above 100 percent.

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Fig 2. The acoustic response of algae to light over time.

(A) Ten-minute averaged time-frequency histograms showing the distribution of Minnaert frequencies from bubbles produced by algae with the application and removal of PAR. The color scale indicates the number of bubble events acoustically characterized over a 10-min period, per frequency bin (195 Hz bin width). (B) Sound Exposure Level (SEL, 10 min. averages, ± 1 S.E., left axis) and dissolved oxygen concentration (right axis) showing an increase, decrease, and increase of dissolved oxygen and SEL with the application, removal and application of PAR, respectively. The grey regions indicate the period when the light source was removed.

https://doi.org/10.1371/journal.pone.0201766.g002

A comparison between acoustically derived bubble size distributions and photographically obtained measurements of bubble size (Fig 3) optically validates the acoustic estimation of algae-driven bubble radii (99 percent significance: no evidence the distributions were unequal, Wilcoxon 2-sided test, p = 0.9087).

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Fig 3. Size distribution comparisons between bubble radii distributions simultaneously derived through photography and passive acoustic recording.

(A) Bubble size distributions obtained from photographically imaged measurements (histogram, left axis) and Minnaert radii (solid line, right axis) every 150 s over a one-hour period of active bubble formation. (B) Boxplots indicating 25th, 50th, 75th percentiles and 5th and 95th percentile outliers (crosses) of optically imaged and acoustically derived bubble radii distributions over the same period.

https://doi.org/10.1371/journal.pone.0201766.g003

Discussion

Algae release oxygen as a byproduct of photosynthesis. While these waste molecules are formed intracellularly in solution, the nucleation of oxygen gas bubbles on the surface of macroalgal tissue takes place when localized supersaturation of dissolved oxygen occurs at a nucleation site. Depending on the timescale of bubble formation and the total gas tension, the diffusion of nitrogen will also contribute to total bubble volume. Previous work has shown the relationship between oxygen bubble production by algae and oxygen supersaturation at their surface microenvironment [13]. The bubbles grow with the addition of more waste oxygen produced by photosynthesis and nitrogen diffusion, ultimately separating from the algae through a combination of buoyancy and surface tension forces. As a spherical bubble is perturbed through release, it oscillates in volume and pressure with exponential decay at a frequency inversely proportional to its radius R0, the roots of the specific heat ratio of the gas γ and ambient fluid pressure Pfl, and the inverse root of ambient fluid density, ρfl, a relationship first derived by Minnaert [14] and now referred to as the Minnaert frequency [15] ωMinn: (1)

This approximation was first developed with the assumption of negligible heat flow (adiabatic conditions) and negligible surface tension, but has since been shown to be a good approximation for bubbles of radii between 30 nm to 300 μm. Consequently, passive acoustic estimates of bubble volume can be made if the water properties and depth at which bubble separation occurs are known.

Our observations demonstrate the mechanism behind previously established correlations between components of underwater soundscapes and the relative abundance of macroalgae on Hawaiian coral reefs [10]. Although ecologically distinct, bubble production is ubiquitous in sea grass beds [16], and can also be observed in marine algal species [17]. Thus, the bubble production mechanism is not specific to S. gracilaria and may be used as a general indicator of photosynthetic activity. Ultrasonic emissions from terrestrial plants are also driven by bubble processes, but the underlying mechanism is water starvation rather than photosynthesis [18].

The contribution of algal sound to soundscapes may be isolated from other ubiquitous sound sources though matched filtering, directional receivers and similar techniques. The observed size distribution and thus corresponding spectral distribution of bubble sound (Fig 3A), and the a-periodic and un-clustered nature of acoustic emission time series (Fig 1), are not shared by any other bubble related process in shallow-water environments, including breaking waves [19]. While active acoustic techniques have been used to estimate marine plant biomass [16, 20], our finding introduces the possibility of noninvasive sensing methods that can quantify relative primary production rates in addition to presence/absence, although further work in disentangling confounding factors is necessary. The relationship between bubble formation processes and gas transfer mechanisms has been well studied [13, 2122] providing a background for the application of bubble science to underwater ecological sensing.

The findings presented here show that algae are capable of producing sound under normal circumstances and that sound may explain a correlative association previously discovered between sound in the 2 to 20 kHz band and algal cover on coral reefs [10]. However, a great deal of further work is required before a passive acoustic tool could be developed for quantifying bubble output from photosynthesis, in-situ primary productivity and algal abundance. A number of caveats in our analysis must be considered and results from soundscape correlation and tank experiments should be considered limited in scope until these caveats are resolved. Underwater soundscapes, especially in the vicinity of a shallow coral reef, are extremely complicated acoustic environments containing sound sources of many types [23]. A number of spatio-temporally variable physical mechanisms that influence the production and propagation of sound from source to receiver also exist.

The most notable interference may be snapping shrimp noise. While the sound generation mechanism of these shrimp involves cavitation [24] and is thus spectrally unique from the relatively narrow-band bubble emissions discussed here, source levels and rate of occurrence can be so high [2527] that they are capable of ‘drowning out’ other sound sources for protracted periods of time. Furthermore, the spectral, temporal frequency, and diurnal behavior of snapping shrimp vary depending on the location and time of year [2829, 2627]. While the frequencies produced by photosynthetic bubbles are within the band of sound produced by snapping shrimp, spectral analysis of sound from shrimp-dominated and coral reef soundscapes reveal spectral differences that suggest other biological contributors can be spectrally evaluated even in the presence of shrimp noise. Bubbles produce transient sounds that contain energy in a relatively narrow frequency band. Due to the higher likelihood of smaller bubbles, it is less likely that bubbles would add significant energy at lower frequencies (i.e., below 5 kHz). Conversely, sound produced by snapping shrimp is broad-band but weighted toward a peak between 4 to 6 kHz [25]. The integration of snapping shrimp sounds over time can produce a low-frequency-weighted spectrum with monotonic decay. Conversely, some reef soundscapes may create higher-frequency-weighted spectra that may include distinct spectral peaks (Fig 4A). Limited comparisons between a snapping-shrimp-dominated soundscape and those correlated with algal dominance in Table 1 show a variation in band levels between 5 and 20 kHz between sites. In this case, the shrimp-dominated soundscape is the Scripps Pier in La Jolla, Ca. Periodic cleaning of encrusting sponges on the pilings reveals large communities of snapping shrimp. Care should be taken when evaluating this comparison as the behavior and sound of snapping shrimp may vary between Hawaii and San Diego. However, the Scripps Pier is relatively unique in that no reefs exist within half a mile of the pier. Recordings were made on a calm day with little swell. The comparison shows that in daytime reef soundscape levels were between 5 to 12 dB higher above approximately 5 kHz. Barring differences in frequency-dependent attenuation or shrimp sound characteristics, the comparison suggests an additional source of higher frequency sound present at the reef sites (Fig 4B). The high source levels emitted by snapping shrimp drive the prevailing thought that they are the overwhelmingly dominant bioacoustic source in coastal underwater ecosystems. However, our suggestion that individually quieter biological sources of sound are detectable in the presence of snapping shrimp is not unprecedented. Chorusing from sea urchin grazing is known to contribute to soundscape spectra off the coast of New Zealand [30] and hermit crabs have been spectrally matched to soundscapes from environments in which both they and snapping shrimp are plentiful [9]. Nevertheless, before accurate quantification of algal photosynthetic activity can be attempted in the field, the behavior and acoustic characteristics of snapping shrimp in the area must be understood to create validated acoustic signal processing algorithms capable of differentiating between shrimp noise and algal sound.

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Fig 4. Spectral comparisons between Hawaiian reef soundscapes and the snapping-shrimp dominated soundscape at the Scripps Pier in La Jolla, CA.

(A) Normalized, intensity filtered pressure spectral density levels recorded at midday local time during sunny days on shallow Hawaiian reefs (colored lines) plotted with similarly filtered levels obtained during crepuscular chorusing of snapping shrimp communities on the Scripps pier (black line with grey shading underneath). (B) Logarithmic spectral level differences between crepuscular pier and midday Hawaiian reef soundscapes in Fig 4A. Note that 3 dB represents a doubling or halving of the spectral level difference in each frequency bin. Hawaii locations are identified as follows: FFS–French Frigate Shoals; Kure–Kure Atoll; Big I.–Ke’ei Beach, Big Island Hawaii; Lis.–Lisianski Island; Oahu–Lai’e Beach, Oahu, Hawaii; Maui–La Perouse Bay, Maui, Hawaii; PHR–Pearl and Hermes Reef; Kauai–Tunnels Beach, Kauai, Hawaii.

https://doi.org/10.1371/journal.pone.0201766.g004

Another confounding factor may be the influence of water movement on bubble formation and retention. Bubbles will not form if water is continually swept from the algae and oxygen saturation state never exceeds 100 percent. Secondly, if bubbles are formed, they may be prematurely removed through wave action, decreasing the size distribution of the bubbles and shifting the frequency distribution higher. The mechanisms governing benthic oxygen saturation state and the effects of water movement on bubble retention are poorly understood. Benthic algae reside at least partially within the fluid boundary layer, especially in rugose environments, and may be somewhat protected from flow. The structure of algal filaments may also assist or retard the removal of bubbles by wave action, meaning that aspects of sound production are likely species-specific. While bubble retainment by algae in current remains to be quantitatively investigated, Fig 5 shows typical turf algae in a shallow reef environment off Hawaii’s Big Island on a sunny day. Fig 5 demonstrates that in very shallow water subject to wave action, bubbles from photosynthesis may be retained if sufficient algal structure exists. Further acoustic, flow, and bubble physics analysis, along with an investigation of biological interaction (both floral and faunal) are required to quantify and understand the impact water movement has on bubble formation and the consequent acoustic emissions by algae in these scenarios.

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Fig 5. Bubbles from photosynthesis present on shallow algal turf subject to swell.

Note the movement of suspended particles during the camera exposure period of 1/125 sec. Scale bar indicates 2 cm. Image courtesy Florybeth La Valle, University of Hawaii.

https://doi.org/10.1371/journal.pone.0201766.g005

The probability that too many transient sounds arrive at the receiver during one FFT integration period for spectral analysis on individual sounds to be performed increases with the size of the reef, the nature of propagation pathways from sources to the receiver, and the acoustic productivity of the benthic community. As the range between any given source and the receiver increases, the probability that multipath arrivals are interpreted as separate signals also rises. However, the spectral content of multipath arrivals is less likely to differ significantly from the direct arrival when compared to other sound sources. Future data collection with a spatial filter such as a directional receiver or hydrophone array can limit the area over which passive acoustic surveys are performed, simplifying the challenges associated with multipath and the large number of sources.

Sound is the most efficient radiation underwater and we continue to discover that important biological components of many aquatic ecosystems are both sensitive to [31] and produce acoustic emissions. Contributions to biological soundscapes on coral reefs include sound deliberately produced by fishes and invertebrates for communication [32] and defense [25], or inadvertently through feeding [30] and movement [9]. To date these sounds have been used to study the behavior and distribution of marine mammals and fish [3233], to understand ambient noise levels in the ocean [3435], and to assess the impacts of anthropogenic noise on marine environments [36]. Soundscape measurements are also effective at night when benthic activity is greatest [9] and passive optical techniques are difficult or impossible to implement [37]. In concert with these acoustic observations, a volumetrically integrative, remote and noninvasive method of measuring primary productivity outputs may lead to more accurate, persistent and less expensive surveys of ecological state in shallow water, the majority of which are currently performed in-situ through diver-based optical methods. Quantifying primary productivity through passive acoustic monitoring could become a technique that may not be limited to coral reef environments. Macroalgae are the dominant benthic primary producer in many temperate coastal and freshwater environments that are more difficult to survey optically due to reduced water clarity. Passive acoustic monitoring of ebullition has been utilized in the monitoring of chemical reactions [38]. A semi-real-time and volumetrically integrative approach can be adopted in biofuel-generating algal reactors using similar methods. The sensing technique proposed here is restricted neither to in-situ observations nor to marine environments but may apply basically to all aquatic environments in which macroalgae grow.

Materials and methods

Background data

The summary data shown in Table 1 were collected in the Northwest Hawaiian Islands (NWHI) during a NOAA Remote Areas Monitoring Program Cruise HA-12-04 on the R/V Hi’Ialakai during August 2012 and from sites accessible from shore on the Main Hawaiian Islands during September-October 2012. Permits were obtained for conducting research in the Papahānaumokuākea Marine National Monument (PMNM-2012-029) and the Main Hawaiian Islands (Department of Land and Natural Resources special activity permit 2012–83). Acoustic data were collected using a single hydrophone Loggerhead Instruments DSG Ocean recorder configured with a sampling frequency of 80 kSs-1 and an electronic gain of 20 dB. Simultaneous with acoustic recorder deployments, benthic phototransects were taken in accordance with NOAA Coral Reef Ecosystem Division rapid ecological assessment protocol [39]. Pearson’s correlation coefficient, ρ, between all phototransect-derived environmental variables, and band-limited pressure spectral density estimates, were calculated over data from all field sites for which acoustic and phototransect data were available. Metrics for which ρ values were greater than 0.6 with p < 0.001 (Bonferroni correction) were considered to be sufficiently correlated. Correlations of particular interest were those that appeared to form a distinct pattern across several metrics (i.e., similarly high correlation across adjacent acoustic bands, combined with a consistent temporal pattern). A full description of the data collection and processing methods associated with Table 1 is available in the associated publication [10].

Summary of the experiment

Tank-based experiments were carried out at the Hawaii Institute of Marine Biology at Coconut Island, Kaneohe Bay, Hawaii. Ten kilograms (wet) of the invasive red algae Gracilaria salicornia were collected by the Department of Aquatic Resources (DAR) of the State of Hawaii in Kaneohe Bay and stored in a 1 m diameter seawater holding tank with a steady filtered (100 um) ocean water flow. One kilogram of algae was visually inspected to remove any associated fauna and relocated to a smaller, plastic, opaque-sided rectangular tank with internal dimensions of 550 x 300 x 300 mm. Seawater was used to fill the tank to a depth of 250 mm and a 50 mm layer of algae was positioned on the floor of the tank between 200 and 250 mm depth. The algae remained negatively buoyant throughout the experiment. An aquarium light (Radion XR30w G4 pro) was positioned centrally over the tank and 228 mm (9 in.) above the water surface. All testing was conducted in a dark room with the aquarium light being the only source of photosynthetically available radiation (PAR). The color temperature was set at close to that of natural sunlight on a clear day (5500 K), at which the light operated at 55 percent of maximum output. Software limitations required a warm-up and cool-down period of 30 min before and after full-strength application, during which light levels were linearly ramped up and down between zero and 55 percent. Mean PAR level was obtained from measurements at fifteen equally spaced locations at algae equivalent depth using a calibrated LI-COR Li-193 spherical underwater quantum sensor and a LI-COR Li-250 light meter. Note that the mean PAR level obtained (381 μmol·m-2s-1) is far below what is expected near the surface on a calm sunny day in the tropics [40]. The experiment was started with algae being brought out of a 24-hour period of darkness and exposed to PAR as described above. After 3 h and 45 min, light levels were reduced to zero. After 7 h of darkness, light levels were increased back to the levels described above until the conclusion of the experiment after 10.5 h of light. The algae were then removed from the tank and disposed of in accordance with DAR procedure.

Acoustic recordings

Acoustic data were collected with a High Technology Inc. HTI-92-WB hydrophone, equipped with a low-power, high sensitivity preamplifier. Hydrophone and preamp system sensitivity was -144.8 dB re 1 VμPa-1 over the 2 Hz to 40 kHz band. The hydrophone was positioned to one side of the tank at 125 mm depth, 60 mm from the nearest tank wall. The preamplifier was powered by a variable DC power supply set at 10 V and drawing 2 mA. Data were acquired using a National Instruments® USB-6366 data acquisition module connected to a laptop computer running National Instruments® LabView® 2013 (SP1) and customized script. Time-stamped data were sampled at 100 KSs-1 at 16-bit depth in discrete 10 s intervals, pausing for a short time in between to save the data and verify that the sampling frequency was accurate. The recordings were processed in Mathworks Matlab® software. Before analysis, a high-pass, 5th order Butterworth filter (stop band: 0–0.5 kHz, pass band: 0.8–50 kHz was applied to remove DC offset, 60 Hz electrical noise or low frequency noise from passing vehicles and other sources.

Acoustic data processing

The peaks in amplitude associated with bubble separation ‘pings’ were identified from pre-filtered acoustic data if absolute peak amplitudes were greater than 5 σ from preamp self-noise levels. A 10 ms window around each of these peaks was isolated for further analysis. Information regarding the number of qualifying peaks and the temporal distribution of inter-peak periods within each 10 s file was retained. In order to calculate the sound exposure level (SEL) of bubble sound, the time duration of each air bubble “ping” was determined as the time between the 5th and 95th percentiles of the cumulative energy within the 10 ms window. SEL values were averaged over successive 10-min periods. Spectral analysis was performed on the time series between the 5th and 95th percentiles using a Kaiser-Bessel-windowed (β = 2.5π) 512-point FFT, overlapped 90 percent, meaning a bin width of 195.3 Hz and an overlapped spectral estimate made every 512 μs. The frequency bin containing the highest pressure spectral density level above 1 kHz, temporally matched to the amplitude peak in the corresponding time series, was determined to best represent the dominant frequency of each bubble separation ping. Regression of log-linear relationships and calculation of residuals was conducted using a simple logarithmic (base ten) model for the relationship between SEL and dissolved oxygen, and a natural logarithmic model for the relationship between the number and mean size of bubbles and dissolved oxygen. Residuals were calculated using linearized values.

Determination of bubble size

Estimates of bubble radii (R0) corresponding to each peak frequency were made using the Minnaert equation (1). For R0 to be a good approximation for the true radii of a freely oscillating bubble, the bubble radius must satisfy the following conditions: that the bubbles are “acoustically small”, the geometric mean of bubble radius and acoustic wavelength is large compared to the viscous boundary layer, the bubbles are “thermally large”, and the Laplace pressure is much less than the equilibrium pressure in the liquid (20).

Dissolved oxygen, pH conductivity, and temperature data

Dissolved oxygen (DO), pH, conductivity, and temperature were measured in 60 s intervals over the duration of the experiment. All non-acoustic sensors were part of a Manta+ 20 multi-probe system placed inside the experiment tank opposite the hydrophone. DO was assessed with an optical dissolved oxygen sensor provided by the Hamilton company (HDO) with a resolution of 0.01 mgL-1 or 0.1% saturation. pH was assessed via an electrolyte filled glass sensor next to a reference electrode. For conductivity, a four electrodes sensor was used while the temperature was assessed with a thermistor. Additional specifics are provided by the manufacturer [41]. While essential for the experiment, the oxygen sensor produced two types of acoustic noise that were additionally filtered from the acoustic data before analysis. The first type of noise was a startup transient that occurred upon system power-up every 60 s. A matched filter was used to exclude 0.2 s portions of recordings in which the transient was present. Secondly, a steady-state doubling of high frequency noise levels was emitted by the sensor for approximately 8 s after the startup transient. These recording periods were identified using a Hilbert-transform-based threshold detection algorithm and excluded from analysis.

Optical validation

Bubble radii were directly measured from high resolution photographs taken using a Canon SL1 single lens reflex camera equipped with a Canon 100 mm F2.8 L macro lens (160 mm effective) mounted on a tripod outside of the aquarium and aimed inward through a transparent window. A scale rule bar was inserted into the aquarium and placed across the field of view, orthogonal to the lens axis and within the depth of field. Only bubbles that were in focus within the depth of field of each image were analyzed. Photographs were taken every 150 s for one hour during a period when algae were observed to be actively producing bubbles. Radii measurements were obtained in post-processing using ENVI software, measured by pixel width and converted to μm using the scale bar in individual photographs.

Supporting information

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Chemical and acoustic responses of algae to changes in photosynthetically available radiation (PAR).

All subfigures are time-aligned. (A) Dissolved oxygen time series. (B) Acoustically determined bubble counts per minute. (C) Acoustically determined mean bubble radius per minute.

(TIFF)

S1 Fig. Chemical and acoustic responses of algae to changes in photosynthetically available radiation (PAR).

All subfigures are time-aligned. (A) Dissolved oxygen time series. (B) Acoustically determined bubble counts per minute. (C) Acoustically determined mean bubble radius per minute.

https://doi.org/10.1371/journal.pone.0201766.s001

(TIFF)

S2 Fig. Log-linear regression plots of acoustic emissions from photosynthesizing algae.

(A) No. of bubbles per minute against dissolved oxygen levels (R2 = 0.76, exponential coefficients α = -2.54, β = 0.43). (B) Mean bubble radii per minute against dissolved oxygen levels (R2 = 0.47, exponential coefficients α = -3.85, β = 0.19). (C) 10-minute Sound Exposure Level against dissolved oxygen levels (R2 = 0.82, exponential coefficients α = 83.15, β = 1.39). The coefficients may be applied to an exponential regression of linear parameters x and y as follows: (2)

https://doi.org/10.1371/journal.pone.0201766.s002

(TIFF)

Acknowledgments

We thank G. B. Deane, F. L. Rohwer, B. Bailey and R. F. Keeling for helpful comments and suggestions; K. Lubarsky, B. Neilson, D. Lager, K. Fuller, and K. Tucker for providing algae samples; J. Davidson and W. Au for providing laboratory facilities; S. Calhoun and B. T. Reyes for calibration of laboratory equipment; F. La Valle for the image in Fig 5; J. Tomlinson, P. D. Franck and S. M. Franck for experiment logistical support; G. J. Orris, S. Ackelson, R. D. Norris, M. J. Buckingham and A. J. Miller for funding support. This work was supported by NSF IGERT grant no. 0903551, U.S. Naval Research Laboratory section 219 program funds, National Research Council and American Society for Engineering Education postdoctoral fellowships and NASA grant no. NASA-14HYSP14-0003. Two anonymous reviewers provided comments that greatly improved the quality of the manuscript.

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Source: plos.org

Genetically Modified Algae Could Be Key to Tomorrow’s Bio Solar Cells


IN BRIEF

BPVs are fuel cells that use the power of photosynthesis in microscopic organisms to create electricity. One new design that uses genetically modified algae is more powerful than previous attempts, and even allows for storage.

ALGAE FUEL

Researchers at the University of Cambridge have developed a new fuel cell that is powered by algae, and that is five times more efficient than existing models that use microscopic plants and algae. This new design is not only more efficient, it is also more cost-effective and practical to use than previous attempts.

These algae-powered fuel cells, described in the journal Nature Energy, are a type of biophotovoltaic (BPV) device, also known as bio solar cells. BPVs harvest solar energy and convert it into electric current using the photosynthetic abilities of microorganisms like algae. This is both an environmentally-friendly and cost-effective alternative energy source.

The green algae Glaucocystis sp., similar to that used by researchers in developing these bio solar cells
The algae Glaucocystis sp. 

The Cambridge team’s version utilized genetically modified algae that works more efficiently than normal, minimizing the amount of electricity that is dissipated without use during photosynthesis.

Additionally, in prior versions of BPVs, charging (light harvesting and electron generation) and energy delivery (transfer to the electrical circuit) have been located within the same compartment. In systems where this is true, electrons generate current right where they’ve been secreted. In this new approach, the researchers developed a two-compartment system where the processes of charging and delivery are separated.

GREEN ENERGY

“Charging and power delivery often have conflicting requirements,” explained Kadi Liis Saar, of the University of Cambridge’s Department of Chemistry, in a press release. “For example, the charging unit needs to be exposed to sunlight to allow efficient charging, whereas the power delivery part does not require exposure to light but should be effective at converting the electrons to current with minimal losses.”

Renewable Energy Sources Of The Future [Infographic]

This design enhances performance and allows for storage, so that energy created during the day could be saved and used at night or on cloudy days. Cells that lack such storage capacity would not be as practical for widespread, commercial use.

At the present, these bio solar cells are not yet powerful enough for significant use; though their energy density of 0.5 Watts per square meter quintuples other algal cells, it’s still only a tenth of that found in conventional solar fuel cells.

As such, these algae-powered cells probably won’t be powering large grids anytime soon. Yet the authors emphasized that they could be well-suited for small applications in sunny but underdeveloped places like Africa, as well as contributing storage power to the driving movement to replace fossil fuels with renewable energy.

New artificial material mimics photosynthesis to create clean, self-sustaining energy source.


It’s one of the holy grails of scientific research: discovering a way of replicating the natural process of photosynthesis, such that light could be easily converted into energy for other purposes, just like a plant does. And now researchers in the US have discovered an artificial material that lets them mimic this system to create a clean, sustainable source of power.

Researchers at Florida State University have discovered a method of using manganese oxide – also known as birnessite – to capture sunlight and then use that solar energy to create an oxidation reaction, breaking down water (H2O) into hydrogen (H) and oxygen (O2). Oxidation occurs during photosynthesis, and by replicating this part of the natural process, we might be able to produce energy in new ways via a simple, practical mechanism.

“In theory, this should be a self-sustaining energy source,” said Jose L. Mendoza-Cortes, assistant professor of chemical engineering. “Perhaps in the future, you could put this material on your roof and it could turn rain water into energy with the help of the sun.”

Best of all, using manganese oxide in this kind of way would be an entirely carbon-neutral method of producing energy sources like hydrogen fuel, and wouldn’t have any negative impacts on the environment. “You won’t generate carbon dioxide or waste,” said Mendoza-Cortes.

Once produced, hydrogen can be used as a fuel and burned with oxygen to form H2O, releasing energy in the process. But usually the creation of hydrogen fuel is powered by burning fossil fuels, which is why this new technology is so exciting.

When looking to find a material that would be able to facilitate the process of breaking down water but also capturing the energy from the Sun, the researchers faced two initial challenges: finding a material that didn’t rust due to exposure to the water, and also one which wasn’t too expensive to create.

The answer Mendoza-Cortes and his team came up with – which is described in their paper in The Journal of Physical Chemistry – was to develop a multilayered material out of manganese oxide. However, it was only when they stripped back the multiple layers to a single layer that they struck what they were looking for. When they did this, the material was able to trap light at a much faster rate.

How is this possible? According to the researchers, the single layer of the manganese oxide material provides what’s called a direct band gap, whereas multiple layers constituted an indirect band gap. Light penetrates different sorts of materials differently, but its energy is only effectively captured and stored by materials with a direct band gap.

What’s remarkable about the material the researchers developed in this instance is that it is more effective at capturing energy when there is only a single layer of it – a desirable outcome for the purposes of any potential real-world applications, as it will be cheaper and easier to manufacture.

“This is why the discovery of this direct band gap material is so exciting,” said Mendoza-Cortes. “It is cheap, it is efficient and you do not need a large amount to capture enough sunlight to carry out fuel generation.”

It’s early days yet and there’s no word so far on when we can expect to see this kind of material manufactured for domestic purposes, but with the researchers already envisaging potential applications like household roof-top energy generators, it’s an incredibly exciting development.

Photosynthesis hack is needed to feed the world by 2050


Using high-performance computing and genetic engineering to boost the photosynthetic efficiency of plants offers the best hope of increasing crop yields enough to feed a planet expected to have 9.5 billion people on it by 2050, researchers report.

This photo shows University of Illinois field trials of various photosynthesis hacks.

Using high-performance computing and genetic engineering to boost the photosynthetic efficiency of plants offers the best hope of increasing crop yields enough to feed a planet expected to have 9.5 billion people on it by 2050, researchers report in the journal Cell.

There has never been a better time to try this, said University of Illinois plant biology professor Stephen P. Long, who wrote the report with colleagues from Illinois and the CAS-MPG Partner Institute of Computational Biology in Shanghai.

“We now know every step in the processes that drive photosynthesis in C3 crop plants such as soybeans and C4 plants such as maize,” Long said. “We have unprecedented computational resources that allow us to model every stage of photosynthesis and determine where the bottlenecks are, and advances in genetic engineering will help us augment or circumvent those steps that impede efficiency.”

Substantial progress has already been made in the lab and in computer models of photosynthesis, Long said.

“Our lab and others have put a gene from cyanobacteria into crop plants and found that it boosts the photosynthetic rate by 30 percent,” he said.

Photosynthetic microbes offer other clues to improving photosynthesis in plants, the researchers report. For example, some bacteria and algae contain pigments that utilize more of the solar spectrum than plant pigments do. If added to plants, those pigments could bolster the plants’ access to solar energy.

Some scientists are trying to engineer C4 photosynthesis in C3 plants, but this means altering plant anatomy, changing the expression of many genes and inserting new genes from C4 plants, Long said.

“Another, possibly simpler approach is to add to the C3 chloroplast the system used by blue-green algae,” he said. This would increase the activity of Rubisco, an enzyme that catalyzes a vital step of the conversion of atmospheric carbon dioxide into plant biomass. Computer models suggest adding this system would increase photosynthesis as much as 60 percent, Long said.

Computer analyses of the way plant leaves intercept sunlight have revealed other ways to improve photosynthesis. Many plants intercept too much light in their topmost leaves and too little in lower leaves; this probably allows them to outcompete their neighbors, but in a farmer’s field such competition is counterproductive, Long said.

Studies headed by U. of I. plant biology professor Donald Ort aim to make plants’ upper leaves lighter, allowing more sunlight to penetrate to the light-starved lower leaves. Computer modeling of photosynthesis also shows researchers where the traffic jams occur — the steps that slow the process down and reduce efficiency.

“The computer model predicts that by altering this system by up-regulating some genes and down-regulating others, a 60 percent improvement could be achieved without any additional resource — so 60 percent more carbon could be assimilated for no more nitrogen,” Long said.

“The next step is to create an in silico plant to virtually simulate the amazingly complex interactions among biological scales,” said U. of I. plant biology professor Amy Marshall-Colon, a co-author on the report. “This type of model is essential to fill current gaps in knowledge and better direct our engineering efforts.”

While many scientific, political and regulatory hurdles remain for plants engineered to do a better job of converting the sun’s energy into biomass, the work should be undertaken now, Long said.

“If we have a success today, it won’t appear in farmers’ fields for 15 years at the very earliest,” he said. “We have to be doing today what we may need in 30 years.”

Scientists have “hacked” photosynthesis, and it could help them speed up food production


An enzyme found in algae can make plants convert carbon dioxide into sugar more efficiently.

shutterstock_89340988_web

Image: koko-tewan/Shutterstock

Photosynthesis is the crucial process by which plants convert sunlight, water and air into energy and food – and scientists from the US and UK have now taken the first step towards speeding the process up using enzymes from blue-green algae.

This is an important breakthrough that could lead to new ways to feed the world’s growing population. “Hearing the results of this experiment for the first time was definitely one of those ‘Eureka!’ moments you live for as a scientist,” Maureen Hanson, a plant geneticist at Cornell University in the US who led the research, told William Herkewitz for Popular Mechanics.

For decades scientists have seen room for improvement in the photosynthesis process – mainly in the activity of an enzyme called Rubisco. Rubisco is the protein that converts CO2 into sugar, and is possibly the most abundant protein on Earth, accounting for up to half of all the soluble protein found in leaves.

But the reason it’s so common is because it’s not very efficient – and researchers have long been searching for a way to boost its output. Scientists estimate “that tinkering with Rubisco and ways to boost the concentration of carbon dioxide around it could generate up to a 60 percent increase in the yields of crops such as rice and wheat,” writes Heidi Ledford for Nature. This would also reduce fertiliser needs and help free up agricultural land. However, up until now there hasn’t been much success in attempts to manipulate Rubisco.

In this new research, the international team decided to take the Rubisco from a small but super efficient organism – the cyanobacterium Synechococcus elongatus.

They then engineered the Rubisco gene into the genome of a tobacco plant’s chloroplast – the organelle in plants where photosynthesis occurs. They discovered that these plants were able to confer CO2 into sugar faster than normal tobacco, a sign that photosynthesis had been sped up.

“This is the first time that a plant has been created through genetic engineering to fix all of its carbon by a cyanobacterial enzyme,” said Hanson in a press release. “It is an important first step in creating plants with more efficient photosynthesis.” Their results are published in Nature.

So what made them succeed where so many others had failed? Importantly, they add two extra bacterial proteins to the crops. Some received a bacterial protein that’s thought to help Rubisco to fold properly, while another group received a bacterial protein that structurally supports Rubisco. Hanson told journalist Herkewitz from Popular Mechanics that this is likely to have helped the tobacco plant utilise the more efficient Rubisco.

The results suggest that if blue-green algae Rubisco was engineered into crops, it could lead to faster food production. But, and this is a big but, there is still a lot more research to be done.

At the moment the algal Rubisco, while more efficient, can waste energy by reacting with oxygen rather than CO2. Currently the scientists are overcoming this by growing the plants in chambers that maintain artificially high CO2 levels, but that’s obviously not a long-term solution.

Usually the blue-green algae overcome this problem by creating structures called carboxysomes around their Rubisco enzymes, creating a CO2-rich environment, but obviously this isn’t something that occurs naturally in tobacco plants.

But there is hope – in June, the team reported that they’d engineered tobacco plants that could generate carboxysome-like structures. So the next step is to try to engineer the algal Rubisco enzyme into these plants to see if this helps to make them more efficient.

The scientists used tobacco plants for this experiment as their genome is so well studied, but this technique will also need to be tested in food crops if we have any hope of using it to help us increase our food production.

Australian scientists are a step closer to converting sunlight and water into fuel


Scientists have replicated a crucial photosynthetic reaction for the first time, taking them a step closer to creating sustainable, cheap fuel from water and sunlight – just like plants do.

Plants use photosynthesis to turn water, carbon dioxide and sunlight into oxygen and the energy they need to power their systems. And for decades scientists have been trying to replicate this reaction in order to create biological systems that can produce cheap, clean hydrogen fuel.

Now, for the first time ever, scientists from the Australian National University in Canberra, Australia, have managed to modify a naturally occurring protein, and use it to capture energy from sunlight, a key step in photosynthesis. Their results have been published in BBA Bioenergetics.

“Water is abundant and so is sunlight. It is an exciting prospect to use them to create hydrogen, and do it cheaply and safely,” Kastoori Hingorani, the lead research from the ARC Centre of Excellence for Translational Photosynthesis, said in a press release.

Hydrogen has the potential to be a zero-carbon replacement for the petroleum products that we currently rely on. But up until now, we haven’t been able to find a way to create it as safely and efficiently as plants do. To replicate this step in the reaction in plants, the research team took a naturally occurring protein called ferritin, and modified it slightly.

Ferritin is found in almost all living organisms, and it usually stores iron. But the team replaced iron with the common metal manganese, so that it closely resembled the water splitting site in photosynthesis. They also replaced another binding site with a light-sensitive pigment, Zinc Chlorin.

Once these changes had been made, the researchers shone light onto the modified ferritin and saw a clear indication of electrical charge transfer, just like the one that occurs in plants. The researchers describe this as the “electrical heartbeat” that’s the key to photosynthesis.

The researchers now need to work on using this protein to create biological, water-splitting systems. But this is an important first step.

“This is the first time we have replicated the primary capture of energy from sunlight,” Ron Pace, a co-researcher in the study, said in the press release. “It’s the beginning of a whole suite of possibilities, such as creating a highly efficient fuel, or to trapping atmospheric carbon.”

One of the most exciting things about this research is that, because this protein is powered by the Sun and does not require batteries or expensive metals, the entire process could be affordable for developing countries.

“That carbon-free cycle is essentially indefinitely sustainable. Sunlight is extraordinarily abundant, water is everywhere – the raw materials we need to make the fuel. And at the end of the usage cycle it goes back to water,” said Pace.

Quantized vibrations are essential to photosynthesis.


 

Photograph of leaves in the sunshine Quantum mechanics in action Physicists in the UK claim to have shown unambiguously that the high efficiency of photosynthesis is driven at least partly by a purely quantum-mechanical phenomenon. Their work could lead to discoveries of other quantum processes in biology, or help in the development of new and better technologies for harvesting solar energy. Arguably the most important chemical reaction on Earth, photosynthesis allows a plant to harness sunlight by converting carbon dioxide and water into energy-rich carbohydrates. For the most part, this takes place in chlorophyll molecules, which are arranged such that neighbouring molecules have different energy levels. When light shines on one of these molecules, an electron is momentarily excited before passing its energy over to a nearby molecule with a slightly lower energy level. In this way, energy can flow “downhill” from energy level to energy level, via different routes, until it reaches a reaction centre where actual photosynthesis occurs. Scientists had previously assumed that the energy moves downhill in a random walk – an incoherent “hopping” between energy levels. But this mechanism does not explain how solar energy is transferred so quickly to a reaction centre, which allows photosynthesis to proceed with energy efficiencies of 95% or more. In recent years, various theoretical and experimental studies have suggested that quantum mechanics plays a role, by transporting energy in a wave-like manner. But for all the results, an explanation based on classical physics could never be ruled out, according to Alexandra Olaya-Castro and Edward O’Reilly of University College London (UCL) in the UK. Quantized vibrations Olaya-Castro and O’Reilly claim to have uncovered the first unambiguous evidence for quantum effects by doing a theoretical study of the vibrational motion of chromophores – colour-producing molecules such as chlorophyll. Drawing inspiration from the field of quantum optics, where specialist techniques have been developed for characterizing the quantum-mechanical nature of light, the researchers showed that the absorption of a photon of sunlight generates an electronic excitation, the energy of which matches a collective vibration of two chromophores. So long as this vibrational energy is greater than the surrounding thermal energy, the researchers say, then a quantum of energy can be exchanged from one chromophore to the other. Olaya-Castro and O’Reilly knew that this energy exchange was purely a quantum effect when they tried to plot a probability distribution of fluctuations in the occupation of the vibrational mode and found that these variations were too small to allow a classical description. “This unambiguously demonstrated that the phenomenon described has no classical analogue,” says O’Reilly. “I’m happy to see this paper published – it’s a breakthrough,” says Gregory Scholes, a chemist at the University of Toronto who has studied the quantum effects of photosynthesis. “There has been a lot of debate in the literature and at meetings lately about the interplay of vibrations – which [we] assumed to confer only classical effects – and electronic coherence in light harvesting. This new work takes the debate to a new level by showing that it is precisely this interplay that makes the system function quantum mechanically!” “Non-trivial quantum effects” Scholes adds that the UCL work “points the way” to experiments that directly detect the signatures of quantum effects. Moreoever, says Olaya-Castro, such quantum signatures might not only be found in photosynthesis: specific vibrational motions are also thought to be involved in other biological processes such as vision, smell and enzyme reactions. “Our results suggest that a careful inspection of the dynamics and fluctuations of these ‘good vibrations’ of molecules in their excited states could benchmark a common principle for non-trivial quantum effects in biology,” she adds. The understanding of photosynthesis is particularly important, however, because of the need to develop methods of harnessing solar energy. “The research on quantum effects in biology has the potential to provide invaluable insights on how to achieve robust, quantum-enhanced energy transfer,” says Olaya-Castro.

Quantized vibrations are essential to photosynthesis, say physicists.


Physicists in the UK claim to have shown unambiguously that the high efficiency of photosynthesis is driven at least partly by a purely quantum-mechanical phenomenon. Their work could lead to discoveries of other quantum processes in biology, or help in the development of new and better technologies for harvesting solar energy.

Arguably the most important chemical reaction on Earth, photosynthesis allows a plant to harness sunlight by converting carbon dioxide and water into energy-rich carbohydrates. For the most part, this takes place in chlorophyll molecules, which are arranged such that neighbouring molecules have different energy levels. When light shines on one of these molecules, an electron is momentarily excited before passing its energy over to a nearby molecule with a slightly lower energy level. In this way, energy can flow “downhill” from energy level to energy level, via different routes, until it reaches a reaction centre where actual photosynthesis occurs.

Scientists had previously assumed that the energy moves downhill in a random walk – an incoherent “hopping” between energy levels. But this mechanism does not explain how solar energy is transferred so quickly to a reaction centre, which allows photosynthesis to proceed with energy efficiencies of 95% or more. In recent years, various theoretical and experimental studies have suggested that quantum mechanics plays a role, by transporting energy in a wave-like manner. But for all the results, an explanation based on classical physics could never be ruled out, according to Alexandra Olaya-Castro and Edward O’Reilly of University College London (UCL) in the UK.

Quantized vibrations

Olaya-Castro and O’Reilly claim to have uncovered the first unambiguous evidence for quantum effects by doing a theoretical study of the vibrational motion of chromophores – colour-producing molecules such as chlorophyll. Drawing inspiration from the field of quantum optics, where specialist techniques have been developed for characterizing the quantum-mechanical nature of light, the researchers showed that the absorption of a photon of sunlight generates an electronic excitation, the energy of which matches a collective vibration of two chromophores. So long as this vibrational energy is greater than the surrounding thermal energy, the researchers say, then a quantum of energy can be exchanged from one chromophore to the other.

Olaya-Castro and O’Reilly knew that this energy exchange was purely a quantum effect when they tried to plot a probability distribution of fluctuations in the occupation of the vibrational mode and found that these variations were too small to allow a classical description. “This unambiguously demonstrated that the phenomenon described has no classical analogue,” says O’Reilly.

“I’m happy to see this paper published – it’s a breakthrough,” saysGregory Scholes, a chemist at the University of Toronto who has studied the quantum effects of photosynthesis. “There has been a lot of debate in the literature and at meetings lately about the interplay of vibrations – which [we] assumed to confer only classical effects – and electronic coherence in light harvesting. This new work takes the debate to a new level by showing that it is precisely this interplay that makes the system function quantum mechanically!”

“Non-trivial quantum effects”

Scholes adds that the UCL work “points the way” to experiments that directly detect the signatures of quantum effects. Moreoever, says Olaya-Castro, such quantum signatures might not only be found in photosynthesis: specific vibrational motions are also thought to be involved in other biological processes such as vision, smell and enzyme reactions. “Our results suggest that a careful inspection of the dynamics and fluctuations of these ‘good vibrations’ of molecules in their excited states could benchmark a common principle for non-trivial quantum effects in biology,” she adds.

The understanding of photosynthesis is particularly important, however, because of the need to develop methods of harnessing solar energy. “The research on quantum effects in biology has the potential to provide invaluable insights on how to achieve robust, quantum-enhanced energy transfer,” says Olaya-Castro.