Tooth DNA confirms ancient cousins lived alongside Homo sapiens and Neanderthals .


DNA analysis of a 110,000-year-old fossilised tooth found in a Siberian cave has provided further evidence for the existence of the Denisovans – a recently identified extinct species of human – and suggests that they likely co-existed and perhaps even interbred with Neanderthals and early Homo sapiens.

The analysis also revealed that the Denisovans were around at least 60,000 years earlier than we thought, were almost as genetically diverse as modern Europeans, and suggests that they might have been breeding with another mysterious relative of modern humans that scientists have yet to identify.

“The world at that time must have been far more complex than previously thought,” study author Susanna Sawyer from the the Max Planck Institute for Evolutionary Anthropology in Germany told Michael Greshko at National Geographic. “Who knows what other hominids lived and what effects they had on us?”

Scientists only became aware of the existence of Denisovans five years ago, when DNA analysis of a single Denisovian tooth and finger bone discovered in a cave in the Altai Mountains in southern Siberia revealed that they belonged to the same lineage of ancient hominins.

The remains were dated to around 50,000 years old, and the team behind the discovery said the Neanderthals were their closest known relatives, having likely split off from each other on the human family tree about 400,000 years ago. It’s thought that they split off from Homo sapiens 100,000 years before that.

Now, thanks to the discovery of a second wisdom tooth, called Denisova 8, in the same Siberian cave back in 2010, scientists are painting a more detailed picture of the Denisovans. While DNA from the tooth can tell us little about how they behaved or what they looked like – although it seems they had big jaws, as Denisova 8 was so big, it was first mistaken for a bear’s tooth – Sawyer and her team have been able to tease out a number of fascinating insights.

Firstly, it’s thought that while the Neanderthals struggled with the harsh Siberian climate, the movement of the Denisovans suggests that they thrived in the bitter cold for many generations, spreading throughout Europe and Asia before mysteriously disappearing from the fossil record.

Carl Zimmer explains at The New York Times:

“[Study co-author Bence Viola from the University of Toronto] speculated that the Neanderthals became inbred because ice age glaciers drove them into isolated refuges in southern Europe. The Denisovans, though, were able to move south through large regions of Asia that were not covered by glaciers.

Another clue that Denisovans traveled far south of Siberia is in the DNA of living humans. Chunks of Denisovan DNA are found in Australian aborigines, New Guineans and Polynesians.”

Because they were not so boxed-in as the Neanderthals, the Denisovans were surprisingly diverse, the researchers comparing them to modern Europeans in terms of genetic diversity. This could have been helped by the Denisovans interbreeding with not just Neanderthals and Homo sapiens, but DNA fragments that belong to neither of these species points to a fourth, unidentified hominin that could have existed at the time.

“If you would have told me five years ago I would be talking about species we don’t have any fossils for, I would have thought you were crazy,” molecular anthropologist Todd Disotell from New York University, who was not involved in the study, told The New York Times.

Now someone just has to find them. Pretty good motivation to drop everything and become an anthropologist, right?

SCIENTISTS DISCOVER WORLD’S OLDEST STONE TOOLS


Sonia Harmand and Jason Lewis examine stone artifacts at the Lomekwi dig in Kenya. Photo credit: West Turkana Archaeological Project

Scientists working in the desert badlands of northwestern Kenya have found stone tools dating back 3.3 million years, long before the advent of modern humans, and by far the oldest such artifacts yet discovered.

The tools, whose makers may or may not have been some sort of human ancestor, push the known date of such tools back by 700,000 years; they also may challenge the notion that our own most direct ancestors were the first to bang two rocks together to create a new technology.

The discovery is the first evidence that an even earlier group of proto-humans may have had the thinking abilities needed to figure out how to make sharp-edged tools. The stone tools mark “a new beginning to the known archaeological record,” say the authors of a new paper about the discovery, published today in the leading scientific journal Nature.

“The whole site’s surprising, it just rewrites the book on a lot of things that we thought were true,” said geologist Chris Lepre of the Lamont-Doherty Earth Observatory and Rutgers University, a co-author of the paper who precisely dated the artifacts. The tools “shed light on an unexpected and previously unknown period of hominin behavior and can tell us a lot about cognitive development in our ancestors that we can’t understand from fossils alone,” said lead author Sonia Harmand, of the Turkana Basin Institute at Stony Brook University and the Université Paris Ouest Nanterre.

Hominins are a group of species that includes modern humans, Homo sapiens , and our closest evolutionary ancestors. Anthropologists long thought that our relatives in the genus Homo—the line leading directly to Homo sapiens—were the first to craft such stone tools. But researchers have been uncovering tantalizing clues that some other, earlier species of hominin, distant cousins, if you will, might have figured it out.

The researchers do not know who made these oldest of tools. But earlier finds suggest a possible answer: The skull of a 3.3-million-year-old hominin, Kenyanthropus platytops, was found in 1999 about a kilometer from the tool site. A K. platyops tooth and a bone from a skull were discovered a few hundred meters away, and an as-yet unidentified tooth has been found about 100 meters away.

Chris Lepre from Lamont-Doherty Earth Observatory takes sediment samples to help date the age of the Lomekwi site. Photo credit: West Turkana Archaeological Project

The precise family tree of modern humans is contentious, and so far, no one knows exactly howK. platyops relates to other hominin species.Kenyanthropus predates the earliest knownHomospecies by a half a million years. This species could have made the tools; or, the toolmaker could have been some other species from the same era, such as Australopithecus afarensis, or an as-yet undiscovered early type of Homo.

Lepre said a layer of volcanic ash below the tool site set a “floor” on the site’s age: It matched ash elsewhere that had been dated to about 3.3 million years ago, based on the ratio of argon isotopes in the material. To more sharply define the time period of the tools, Lepre and co-author and Lamont-Doherty colleague Dennis Kent examined magnetic minerals beneath, around and above the spots where the tools were found.

The Earth’s magnetic field periodically reverses itself, and the chronology of those changes is well documented going back millions of years. “We essentially have a magnetic tape recorder that records the magnetic field … the music of the outer core,” Kent said. By tracing the variations in the polarity of the samples, they dated the site to 3.33 million to 3.11 million years.

Another co-author, Rhonda Quinn of Seton Hall University, studied carbon isotopes in the soil, which along with animal fossils at the site allowed researchers to reconstruct the area’s vegetation. This led to another surprise: The area was at that time a partially wooded, shrubby environment. Conventional thinking has been that sophisticated tool-making came in response to a change in climate that led to the spread of broad savannah grasslands, and the consequent evolution of large groups of animals that could serve as a source of food for human ancestors.

One line of thinking is that hominins started knapping—banging one rock against another to make sharp-edged stones—so they could cut meat off of animal carcasses, said paper co-author Jason Lewis of the Turkana Basin Institute and Rutgers. But the size and markings of the newly discovered tools “suggest they were doing something different as well, especially if they were in a more wooded environment with access to various plant resources,” Lewis said. The researchers think the tools could have been used for breaking open nuts or tubers, bashing open dead logs to get at insects inside, or maybe something not yet thought of.

The Lomekwi 3 dig sits in arid lands west of Lake Turkana in northwest Kenya. Photo credit: West Turkana Archaeological Project

“The capabilities of our ancestors and the environmental forces leading to early stone technology are a great scientific mystery,” said Richard Potts , director of the Human Origins Program at the Smithsonian’s National Museum of Natural History, who was not involved in the research. The newly dated tools “begin to lift the veil on that mystery, at an earlier time than expected,” he said. Potts said he had examined the stone tools during a visit to Kenya in February.

“Researchers have thought there must be some way of flaking stone that preceded the simplest tools known until now,” he said. “Harmand’s team shows us just what this even simpler altering of rocks looked like before technology became a fundamental part of early human behavior.”

Ancient stone artifacts from East Africa were first uncovered at Olduvai Gorge in Tanzania in the mid-20th century, and those tools were later associated with fossil discoveries in the 1960s of the early human ancestor Homo habilis. That species has been dated to 2.1 million to 1.5 million years ago.

Subsequent finds have pushed back the dates of humans’ evolutionary ancestors, and of stone tools, raising questions about who first made that cognitive leap. The discovery of a partial lower jaw in the Afar region of Ethiopia, announced on March 4, pushes the fossil record for the genusHomo to 2.8 million years ago. Evidence from recent papers, the authors note, suggests that there is anatomical evidence thatHomo had evolved into several distinct lines by 2 million years ago.

Photos of selected Lomekwi 3 stones accompanying the paper show both cores and flakes knapped from the cores that the authors say illustrate various techniques.

There is some evidence of more primitive tool use going back even before the new find. In 2009, researchers at Dikika, Ethiopia, dug up 3.39 million-year-old animal bones marked with slashes and other cut marks, evidence that someone used stones to trim flesh from bone and perhaps crush bones to get at the marrow inside. That is the earliest evidence of meat and marrow consumption by hominins . No tools were found at the site, so it’s unclear whether the marks were made with crafted tools or simply sharp-edged stones. The only hominin fossil remains in the area dating to that time are fromAustralopithecus afarensis.

The new find came about almost by accident: Harmand and Lewis said that on the morning of July 9, 2011, they had wandered off on the wrong path, and climbed a hill to scout a fresh route back to their intended track. They wrote that they “could feel that something was special about this particular place.” They fanned out and surveyed a nearby patch of craggy outcrops. “By teatime,” they wrote, “local Turkana tribesman Sammy Lokorodi had helped [us] spot what [we] had come searching for.”

By the end of the 2012 field season, excavations at the site, named Lomekwi 3, had uncovered 149 stone artifacts tied to tool-making, from stone cores and flakes to rocks used for hammering and others possibly used as anvils to strike on.

The researchers tried knapping stones themselves to better understand how the tools they found might have been made. They concluded that the techniques used “could represent a technological stage between a hypothetical pounding-oriented stone tool use by an earlier hominin and the flaking-oriented knapping behavior of [later] toolmakers.” Chimpanzees and other primates are known to use a stone to hammer open nuts atop another stone. But using a stone for multiple purposes, and using one to crack apart another into a sharper tool, is more advanced behavior.

The find also has implications for understanding the evolution of the human brain. The toolmaking required a level of hand motor control that suggests that changes in the brain and spinal tract needed for such activity could have occurred before 3.3 million years ago, the authors said.

“This is a momentous and well-researched discovery,” said paleoanthropologist Bernard Woodof George Washington University, who was not involved in the study. “I have seen some of these artifacts in the flesh, and I am convinced they were fashioned deliberately.” Wood said he found it intriguing to see how different the tools are from so-called Oldowan stone tools, which up to now have been considered the oldest and most primitive.

Lepre, who has been conducting fieldwork in eastern Africa for about 15 years, said he arrived at the dig site about a week after the discovery. The site is several hours’ drive on rough roads from the nearest town, located in a hot, dry landscape he said is reminiscent of Arizona and New Mexico. Lepre collected chunks of sediment from a series of depths and brought them back to Lamont-Doherty for analysis. He and Kent used a bandsaw to trim the samples into sugar cube-size blocks and inserted them into a magnetometer, which measured the polarity of tiny grains of the minerals hematite and magnetite contained in the sediment.

“The magnetics pretty much clinches that the age is something like 3.3 million years old,” said Kent, who also is a professor at Rutgers.

Earlier dating work by Lepre and Kent helped lead to another landmark paper in 2011 : a study that suggested Homo erectus , another precursor to modern humans, was using more advanced tool-making methods 1.8 million years ago, at least 300,000 years earlier than previously thought.